Sunset Lake Software - Comments for "Load pdb files from the NCBI" http://www.sunsetlakesoftware.com/forum/load-pdb-files-ncbi Comments for "Load pdb files from the NCBI" en I downloaded the file http://www.sunsetlakesoftware.com/forum/load-pdb-files-ncbi#comment-103 <p>I downloaded the file manually, placed it on my server, and was able to download it via the following link: <a href="molecules://www.sunsetlakesoftware.com/sites/default/files/mmdb.pdb">molecules://www.sunsetlakesoftware.com/sites/default/files/mmdb.pdb</a>, so it's not a problem with the PDB file itself (although I do see that I'm not creating the bonds correctly, so I might need to fix that). </p> <p>However, when I go to the NCBI link in the built-in browser, it starts the download and displays a blank molecule. Examining the file it downloads, it appears that the NCBI uses a redirect for the download link and Molecules is not following that redirect to get to the actual file. I'll see if I can fix that.</p> pubDate Tue, 25 Nov 2008 18:23:00 +0000 dc:creator Brad Larson guid false comment 103 at http://www.sunsetlakesoftware.com Okay, I tried to upload the http://www.sunsetlakesoftware.com/forum/load-pdb-files-ncbi#comment-99 <p>Okay, I tried to upload the file but I got a message saying that the .pdb extension isn't allowed. </p> <p>So, here is a link to the file: <a href="http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?Dopt=s&amp;uid=50438" rel="nofollow">1NAJ</a></p> <p>When you get to the page, click "Structure view in Rasmol" to download a pdb formatted file or Structure view in Cn3D to download an mmdb formatted file.</p> <p>Thanks!</p> pubDate Tue, 25 Nov 2008 03:23:29 +0000 dc:creator Sandra Porter guid false comment 99 at http://www.sunsetlakesoftware.com